Tokyo University of Technology School of Bioscience and Biotechnology Matsui Lab


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Isolation of novel microbes

T.Matsui, N. Shinzato, H.Tamaki, M. Muramatsu, and S. Hanada, Shinella yambaruensis sp. nov, a 3-methyl sulfolane assimilating bacterium isolated from soil in Okinawa. Int. J. Syst. Environ. Microbiol., 59:536-539 (2009)

T.Matsui, G.Tokuda, and N.Shinzato, Termites as functional gene resources, Recent Patents on Biotechnology, (2009), 3, 10-18.

Matsui, J. Tanaka, T. Namihira, N. Shinzato, Antibiotics production by an actinomycete isolated from the termite gut. J Basic Microbiol, 52:731-735 (2012)

Matsui, H. Semba, S. Hanada, Citricoccus yambaruensis sp. nov., a racemic phenylsuccinate stereospecifically assimilating actinomycete. J. Gen. Appl. Microbiol. 58:373-378 (2012)



El Bassi, N. Shinzato, T. Namihira,T.Matsui, Biodegradation of thiodiglycol, a hydrolyzate of the chemical weapon Yperite, by benzothiophene-desulfurizing bacteria., J Hazard Mater, 167:124-127 (2009)

Matsuiand K. Maruhashi, Isolation of catotenoid deficient mutant from alkylated dibenzothiophene desulfurizing nocardioform bacteria, Gordonia sp. TM414.  Curr. Microbiol. 48 130-134 (2004)

Matsui,  Y. Tanaka, K. Maruhashi, and R. Kurane, Naphtho [1,2-b] thiophene degradation by Pseudomonassp. HKT554: Involvement of naphthalene dioxygenase.  Curr. Microbiol. 46, 39-42 (2003)

Matsui, K. Noda, Y. Tanaka,  K. Maruhashi, and R. Kurane, RecombinantRhodococcussp. strain T09 can desulfurize DBT in the presence of inorganic sulfate. Curr. Microbiol. 45, 240-244 (2002)

T.Matsui, T.Onaka, K.Maruhashi, and R.Kurane, Benzo[b]thiophene desulfurization by Gordonia rubropertinctus strain T08. Appl. Microbiol. Biotechnol. 57, 212-215 (2001).

T.Matsui, K.Hirasawa, K. Koizumi, K.Maruhashi, and R.Kurane, Dibenzothiophene desulfurizing genes copy number optimization to increase the desulfurization activity of recombinant Rhodococcussp.  Biotechnol. Lett. 23, 1715-1718 (2001)

T.Matsui, K.Hirasawa, J.Konishi, Y.Tanaka, K. Maruhashi, and R.Kurane, Microbial desulfurization of alkylated dibenzothiophene and alkylated benzothiophene by recombinant Rhodococcus sp. strain T09. Appl. Microbiol.Biotechnol. 56, 196-200 (2001)

T.Matsui, K.Hirasawa, K.Koizumi, K.Maruhashi, and R.Kurane, Effect of dsz D gene expression on benzothiophene degradation of Rhodococcus sp. strain T09.  Proc. Biochem. 37, 31-34 (2001).

T.Matsui, T.Onaka, Y.Tanaka, T.Tezuka, M.Suzuki, and R.Kurane, Alkylated benzothiophene desulfurization by Rhodococcus sp. strain T09. Biosci. Biotech. Biochem. 64,596-599 (2000)


El-Bassi, H. Iwasaki, H. Oku, N. Shinzato,T. Matsui, Biotransformation of benzothiazole derivatives by thePseudomonas putida strain HKT554.  Chemosphere, 81:109-113 (2010)

Matsui, K. Kato, T. Namihira, N. Shinzato, and H. Semba, Stereospecific degradation of phenylsuccinate by actinomycetes. Chemosphere, 76:1278-1282 (2009)

T.Matsui, A. Miura, T. Iiyama, N. Shinzato, H. Matsuda, and K. Furuhashi, Effect of fatty oil dispersion on oil-containing wastewater treatment.  J. Hazard. Mater. 118 255-258 (2005).

Process optimization

High cell density cultivation

H. Ramadhan,T. Matsui, K. Nakano, H. Minami, High cell density cultivation ofPseudomonas putida strain HKT554 and its application for optically active sulfoxide production. Appl. Microbiol. Biotechnol., 97:1903-1907 (2013)

Matsui, T. Togari, S. Misawa, T. Namihira, N. Shinzato, H. Matsuda, and S. Sato, Optimized culture conditions for the efficient production of porcine adenylate kinase in recombinantEscherichia coli. Appl Biochem Biotechnol, 162:823-829 (2010)

Matsui, H. Sato, H. Yamamuro, N. Shinzato, H. Matsuda, S. Misawa, and S. Sato, High Cell Density Cultivation of recombinantE.colifor hirudin variant 1 production by temperature shift controlled by pUC18-based replicative origin. Appl. Microbiol. Biotechnol., 80:779-783 (2008)

Matsui,, H. Sato, H. Yamamuro S. Misawa, N. Shinzato, H. Matsuda, J. Takahashi, and S. Sato, High cell density cultivation of recombinantEscherichia colifor hirudin variant 1 production., J. Biotechnol, 134: 88-92 (2008)

Nocardioform bacteria

Matsui, H. Saeki, N. Shinzato, and H. Matsuda, Analysis of the 7.6 kb cryptic plasmid pNC500 fromRhodococcus rhodochrousB-276 and construction of Rhodococcus-E.coli shuttle vector. Appl. Microbiol. Biotechnol.  74 169-175 (2007)

T.Matsui, H. Saeki, N. Shinzato, and H. Matsuda, Characterization of a Rhodoccoccus-E.coli shuttle vector, pNC9501 constructed from the cryptic plasmid of a propene-degrading bacterium.  Curr. Microbiol.52 445-448 (2006)

T.Matsui, and K.Furuhashi, Asymmetric oxidation of isopropyl moieties of aliphatic and aromatic hydrocarbons by Rhodococcussp. 11B.  Biosci. Biotech. Biochem., 59, 1342-1344(1995)

Food Microbiology

El Bassi, M. Hassouna, N. Shinzato, andT. Matsui,Biopreservation of refrigerated and vacuum-packed Dicentrarchus labrax by lactic acid bacteria.  J. Food Sci., 74:335-339 (2009)

Shinzato, T. Namihira, Y. Tamaki,M. Tsukahara, andT. Matsui,  Application of random amplified polymorphic DNA (RAPD) analysis coupled with microchip electrophoresis for high-resolution identification ofMonascus strains.  Appl. Microbiol. Biotechnol, 82:1187-1193 (2009)

Environmental Microbiology

Namihira, N. Shinzato, H. Akamine, H. Maekawa,T. Matsui,  Influence of nitrogen fertilization on tropical-grass silage assessed by ensiling process monitoring using chemical and microbial community analyses.  J. Appl. Microbiol., 108: 1954-1965 (2010)

T.Matsui, Isolation of moderately halophilic bacteria from Tunisian soil samples and transformation by electroporation using a Escherichia coli-Halomonas spp. shuttle vector., Ind. J. Biotechnol., In press.

Ueno, N.T. Quyet, N. Shinzato,T. Matsui, Antifungalactivity of microbes obtained from subtropical region, Okinawa, againstMagnaporthe oryzae., Trop. Agr. Develop., In press.

Review etc.

松井 徹、有機硫黄化合物分解菌の解析と応用-バイオ脱硫研究の新たな展開-、ケミカルエンジニヤリング, 50 684-687 (2005)

松井 徹、「バイオ脱硫菌の可能性」 、硫酸と工業、59: 1-5 (2006)

T.Matsui, G.Matsuzaki, and N. Shinzato, Genetic Vectors for Corynebacterineae, (2007) Genetic Vectors Research Focus, Nova Science Publishers, Inc, NY, pp.243-257.


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